-Genomic Data Links
Protein
Vax2
UniPROBE Accession Number
UP00106
Species
Mus musculus
Domain
Homeobox
Uniprot
Q9WTP9
Name and Synonyms
ventral anterior homeobox containing gene 2
Ventral anterior homeobox 2, Ventral retina homeodomain protein, Vex
IHOP
126290
Description
None Available
RefSeq
NP_036042
Vax2 DNA binding domain
1   KRTRTSFTAE QLYRLEMEFQ RCQYVVGRER TELARQLNLS ETQVKVWFQN
51  RRTKQKK
JASPAR
None Available
-PBM Motif Data for Vax2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
A.TAATTAA (E.S. 0.49792)
TTAATTA.T (E.S. 0.49792)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNTAATNDNN
NNHNATTANN
Downloads
Download the zip of all Vax2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Vax2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=106&sourceDB=uniprobe
-Vax2 Datasets
Clone ID Expression Expression Method Save View
pTH3500 #1 IVT save search
Clone pTH3500 insert sequence
1   TIREIVLPKG LDLDRPKRTR TSFTAEQLYR LEMEFQRCQY VVGRERTELA
51  RQLNLSETQV KVWFQNRRTK QKKDQSRDLE KRASSSASEA FAT
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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