-Genomic Data Links
Protein
Nkx2-4
UniPROBE Accession Number
UP00107
Species
Mus musculus
Domain
Homeobox
Uniprot
Q9EQM3
Name and Synonyms
NK2 transcription factor related, locus 4 (Drosophila)
1700001P03Rik, Homeobox protein NK-2 homolog D, Homeobox protein NKX2.4, Homeobox protein Nkx-2.4, Nkx-2.4, Nkx2d, tinman
IHOP
153356
Description
None Available
RefSeq
NP_075993
Nkx2-4 DNA binding domain
1   RKRRVLFSQA QVYELERRFK QQKYLSAPER EHLASMIHLT PTQVKIWFQN
51  HRYKMKR
JASPAR
None Available
-PBM Motif Data for Nkx2-4
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CCACTTGA (E.S. 0.49790)
TCAAGTGG (E.S. 0.49790)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNRAGDRBNN
NNVYHCTYNN
Downloads
Download the zip of all Nkx2-4 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Nkx2-4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=107&sourceDB=uniprobe
-Nkx2-4 Datasets
Clone ID Expression Expression Method Save View
pTH3074 #1 IVT save search
Clone pTH3074 insert sequence
1   ADAAKSLAPL HAAAPRRKRR VLFSQAQVYE LERRFKQQKY LSAPEREHLA
51  SMIHLTPTQV KIWFQNHRYK MKRQAKDKAA QQLQQEGGLG PPP
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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