-Genomic Data Links
Protein
Obox6
UniPROBE Accession Number
UP00109
Species
Mus musculus
Domain
Homeobox
Uniprot
Q8VHG3
Name and Synonyms
oocyte specific homeobox 6
None Available
IHOP
155891
Description
None Available
RefSeq
NP_663756
Obox6 DNA binding domain
1   RKIRTVYTEE QKCVLKKHFH KCTYPSREQR MALAVLVGVT ANEIQIWFKN
51  HRAKSKR
JASPAR
None Available
-PBM Motif Data for Obox6
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
AA..GGATTA (E.S. 0.49703)
TAATCC..TT (E.S. 0.49703)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNRGATTAN
NTAATCYNNN
Downloads
Download the zip of all Obox6 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Obox6 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=109&sourceDB=uniprobe
-Obox6 Datasets
Clone ID Expression Expression Method Save View
pTH3440 #1 E. coli save search
Clone pTH3440 insert sequence
1   PSYGDRRVSL VTPRKHRKIR TVYTEEQKCV LKKHFHKCTY PSREQRMALA
51  VLVGVTANEI QIWFKNHRAK SKRESLQNVP AALPETNGSS EAV
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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