-Genomic Data Links
Protein
Gsc
UniPROBE Accession Number
UP00112
Species
Mus musculus
Domain
Homeobox
Uniprot
Q02591
Name and Synonyms
goosecoid
Homeobox protein goosecoid
IHOP
121439
Description
None Available
RefSeq
NP_034481
Gsc DNA binding domain
1   RRHRTIFTDE QLEALENLFQ ETKYPDVGTR EQLARKVHLR EEKVEVWFKN
51  RRAKWRR
JASPAR
None Available
-PBM Motif Data for Gsc
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTAATCCC (E.S. 0.49835)
GGGATTAG (E.S. 0.49835)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNHHBVRSNN
NNSYBVDDNN
Downloads
Download the zip of all Gsc PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Gsc in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=112&sourceDB=uniprobe
-Gsc Datasets
Clone ID Expression Expression Method Save View
pTH2327 #1 E. coli save search
Clone pTH2327 insert sequence
1   SRTELQLLNQ LHCRRKRRHR TIFTDEQLEA LENLFQETKY PDVGTREQLA
51  RKVHLREEKV EVWFKNRRAK WRRQKRSSSE ESESAEKWNK TSS
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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