-Genomic Data Links
Protein
Hoxc4
UniPROBE Accession Number
UP00113
Species
Mus musculus
Domain
Homeobox
Uniprot
Q08624
Name and Synonyms
homeo box C4
Homeobox protein Hox-C4, Hox-3.5, Hoxc-4
IHOP
121746
Description
None Available
RefSeq
NP_038581
Hoxc4 DNA binding domain
1   KRSRTAYTRQ QVLELEKEFH YNRYLTRRRR IEIAHSLCLS ERQIKIWFQN
51  RRMKWKK
JASPAR
None Available
-PBM Motif Data for Hoxc4
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49716)
TTAATTAA (E.S. 0.49716)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNHNATTWN
NWAATNDNNN
Downloads
Download the zip of all Hoxc4 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxc4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=113&sourceDB=uniprobe
-Hoxc4 Datasets
Clone ID Expression Expression Method Save View
pTH3491 #1 E. coli save search
Clone pTH3491 insert sequence
1   KIHVSTVNPN YNGGEPKRSR TAYTRQQVLE LEKEFHYNRY LTRRRRIEIA
51  HSLCLSERQI KIWFQNRRMK WKKDHRLPNT KVRSAPPAGA APS
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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