-Genomic Data Links
Protein
Rhox6
UniPROBE Accession Number
UP00116
Species
Mus musculus
Domain
Homeobox
Uniprot
Q8BPD6
Name and Synonyms
reproductive homeobox 6
AV213605, AW548842, Psx1
IHOP
123815
Description
None Available
RefSeq
NP_032981
Rhox6 DNA binding domain
1   RYRRTRFTHS QLHDLERLFQ ETRYPSLRAR RDLARWMGVD ECDVQNWFRM
51  RRALFQR
JASPAR
None Available
-PBM Motif Data for Rhox6
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTAATTAG (E.S. 0.49584)
CTAATTAG (E.S. 0.49584)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NTAAYNMNNN
NNNKNRTTAN
Downloads
Download the zip of all Rhox6 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Rhox6 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=116&sourceDB=uniprobe
-Rhox6 Datasets
Clone ID Expression Expression Method Save View
pTH4251 #1 E. coli save search
Clone pTH4251 insert sequence
1   PDSIRNPHVL NRLAQLRYRR TRFTHSQLHD LERLFQETRY PSLRARRDLA
51  RWMGVDECDV QNWFRMRRAL FQRNRRVLMF CELPPLPQSD SP
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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