-Genomic Data Links
Protein
Hoxd10
UniPROBE Accession Number
UP00121
Species
Mus musculus
Domain
Homeobox
Uniprot
P28359
Name and Synonyms
homeo box D10
AI385591, AI874987, Homeobox protein Hox-D10, Hox-4.5, Hox-5.3, Hoxd-10
IHOP
121752
Description
None Available
RefSeq
NP_038582
Hoxd10 DNA binding domain
1   RKKRCPYTKH QTLELEKEFL FNMYLTRERR LEISKSVNLT DRQVKIWFQN
51  RRMKLKK
JASPAR
None Available
-PBM Motif Data for Hoxd10
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CAATAAAA (E.S. 0.48843)
TTTTATTG (E.S. 0.48843)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNHNYNNNN
NNNNRNDNNN
Downloads
Download the zip of all Hoxd10 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxd10 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=121&sourceDB=uniprobe
-Hoxd10 Datasets
Clone ID Expression Expression Method Save View
pTH2368 #1 IVT save search
Clone pTH2368 insert sequence
1   IKSDTPTSNW LTAKSGRKKR CPYTKHQTLE LEKEFLFNMY LTRERRLEIS
51  KSVNLTDRQV KIWFQNRRMK LKKMSRENRI RELTANLTFS
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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