-Genomic Data Links
Protein
Gsh2
UniPROBE Accession Number
UP00127
Species
Mus musculus
Domain
Homeobox
Uniprot
P31316
Name and Synonyms
genomic screened homeo box 2
Gsh-2, Homeobox protein GSH-2
IHOP
121443
Description
None Available
RefSeq
NP_573555
Gsh2 DNA binding domain
1   KRMRTAFTST QLLELEREFS SNMYLSRLRR IEIATYLNLS EKQVKIWFQN
51  RRVKHKK
JASPAR
None Available
-PBM Motif Data for Gsh2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
G.TAATTA.C (E.S. 0.49678)
G.TAATTA.C (E.S. 0.49678)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNTAATDDNN
NNHHATTANN
Downloads
Download the zip of all Gsh2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Gsh2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=127&sourceDB=uniprobe
-Gsh2 Datasets
Clone ID Expression Expression Method Save View
pTH3990 #1 E. coli save search
Clone pTH3990 insert sequence
1    MSRSFYVDSL IIKDSSRPAP SLPESHPGPD FFIPLGMPSP LVMSVSGPGC
51   PSRKSGAFCV CPLCVTSHLH SSRPPAGAGG GATGTAGAAV AGGGVAGGTG
101  ALPLLKSQFS PAPGDAQFCP RVSHAHHHHH PPQHHHHHHQ PQQPGSAAAA
151  AAAAAAAAAA AAALGHPQHH APVCAATTYN MSDPRRFHCL SMGGSDTSQV
201  PNGKRMRTAF TSTQLLELER EFSSNMYLSR LRRIEIATYL NLSEKQVKIW
251  FQNRRVKHKK EGKGASRNNH TSCKCVGSQA HYARSEDEDS LSPASANEDK
301  EISPL
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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