-Genomic Data Links
Protein
Pou3f1
UniPROBE Accession Number
UP00129
Species
Mus musculus
Domain
Homeobox, POU
Uniprot
P21952
Name and Synonyms
POU domain, class 3, transcription factor 1
Oct6, Oct-6, Octamer-binding transcription factor 6, Otf6, Otf-6, POU-domain transcription factor SCIP, Scip, Test1, Tst1, Tst-1
IHOP
123678
Description
None Available
RefSeq
NP_035271
Pou3f1 DNA binding domain
1   RKKRTSIEVG VKGALESHFL KCPKPSAHEI TGLADSLQLE KEVVRVWFCN
51  RRQKEKR
JASPAR
None Available
-PBM Motif Data for Pou3f1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
AATTAATT (E.S. 0.49662)
AATTAATT (E.S. 0.49662)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNWWATKNN
NNMATWWNNN
Downloads
Download the zip of all Pou3f1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Pou3f1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=129&sourceDB=uniprobe
-Pou3f1 Datasets
Clone ID Expression Expression Method Save View
pTH3819 #1 E. coli save search
Clone pTH3819 insert sequence
1    PGAGGGGSSV GEHSDEDAPS SDDLEQFAKQ FKQRRIKLGF TQADVGLALG
51   TLYGNVFSQT TICRFEALQL SFKNMCKLKP LLNKWLEETD SSSGSPTNLD
101  KIAAQGRKRK KRTSIEVGVK GALESHFLKC PKPSAHEITG LADSLQLEKE
151  VVRVWFCNRR QKEKRMTPAA GAGHPPMDDV YAPGE
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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