-Genomic Data Links
Protein
Lhx3
UniPROBE Accession Number
UP00130
Species
Mus musculus
Domain
Homeobox
Uniprot
P50481
Name and Synonyms
LIM homeobox protein 3
Homeobox protein LIM-3, Homeobox protein P-LIM, LIM/homeobox protein Lhx3, Lim3, Lim-3, mLIM3, mLim-3, Plim, P-LIM
IHOP
122520
Description
None Available
RefSeq
NP_001034742
Lhx3 DNA binding domain
1   KRPRTTITAK QLETLKSAYN TSPKPARHVR EQLSSETGLD MRVVQVWFQN
51  RRAKEKR
JASPAR
None Available
-PBM Motif Data for Lhx3
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49967)
TTAATTAA (E.S. 0.49967)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNYAATHWN
NWDATTRNNN
Downloads
Download the zip of all Lhx3 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Lhx3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=130&sourceDB=uniprobe
-Lhx3 Datasets
Clone ID Expression Expression Method Save View
pTH3431 #1 E. coli save search
Clone pTH3431 insert sequence
1   KADYETAKQR EAEATAKRPR TTITAKQLET LKSAYNTSPK PARHVREQLS
51  SETGLDMRVV QVWFQNRRAK EKRLKKDAGR QRWGQYFRNM KRS
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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