-Genomic Data Links
Protein
Nkx1-2
UniPROBE Accession Number
UP00139
Species
Mus musculus
Domain
Homeobox
Uniprot
P42580
Name and Synonyms
NK1 transcription factor related, locus 2 (Drosophila)
Homeobox protein SAX-1, NK1 transcription factor-related protein 2, Nkx1.1, Nkx-1.1, NKX-1.1, Nkx-1.2, Sax1
IHOP
124452
Description
None Available
RefSeq
NP_033149
Nkx1-2 DNA binding domain
1   RRARTAFTYE QLVALENKFR ATRYLSVCER LNLALSLSLT ETQVKIWFQN
51  RRTKWKK
JASPAR
None Available
-PBM Motif Data for Nkx1-2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTAATTAG (E.S. 0.49785)
CTAATTAG (E.S. 0.49785)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNTAAWNDNN
NNHNWTTANN
Downloads
Download the zip of all Nkx1-2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Nkx1-2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=139&sourceDB=uniprobe
-Nkx1-2 Datasets
Clone ID Expression Expression Method Save View
pTH3214 #1 E. coli save search
Clone pTH3214 insert sequence
1   SPRPRRRRAE SSCAKPRRAR TAFTYEQLVA LENKFRATRY LSVCERLNLA
51  LSLSLTETQV KIWFQNRRTK WKKQNPGADG AVQAGGGAPQ PGT
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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