-Genomic Data Links
Protein
Vsx1
UniPROBE Accession Number
UP00141
Species
Mus musculus
Domain
Homeobox
Uniprot
Q91V10
Name and Synonyms
visual system homeobox 1 homolog (zebrafish)
Homeodomain protein RINX, Retinal inner nuclear layer homeobox protein, Rinx, Transcription factor VSX1, Visual system homeobox 1
IHOP
150154
Description
None Available
RefSeq
NP_473409
Vsx1 DNA binding domain
1   RRHRTVFTAH QLEELEKAFG EAHYPDVYAR EMLAAKTELP EDRIQVWFQN
51  RRAKWRK
JASPAR
None Available
-PBM Motif Data for Vsx1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49876)
TTAATTAA (E.S. 0.49876)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNTAATDDNN
NNHHATTANN
Downloads
Download the zip of all Vsx1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Vsx1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=141&sourceDB=uniprobe
-Vsx1 Datasets
Clone ID Expression Expression Method Save View
pTH1728 #1 IVT save search
Clone pTH1728 insert sequence
1   EKNDPKMSLI LGKRKKRRHR TVFTAHQLEE LEKAFGEAHY PDVYAREMLA
51  AKTELPEDRI QVWFQNRRAK WRKREKRWGG SSVMAEYGLY GAM
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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