-Genomic Data Links
Protein
Pou6f1
UniPROBE Accession Number
UP00146
Species
Mus musculus
Domain
Homeobox, POU
Uniprot
Q07916
Name and Synonyms
POU domain, class 6, transcription factor 1
2310038G18Rik, Brn5.0, C79593, Emb, Octamer-binding transcription factor EMB, Transcription regulatory protein MCP-1
IHOP
123687
Description
None Available
RefSeq
NP_034257
Pou6f1 DNA binding domain
1   RKRRTSFTPQ AIEALNAYFE KNPLPTGQEI TEIAKELNYD REVVRVWFCN
51  RRQTLKN
JASPAR
None Available
-PBM Motif Data for Pou6f1
Primary Motif (clone pTH1731 )  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
ATAATGAG (E.S. 0.49875)
CTCATTAT (E.S. 0.49875)
Primary Motif (clone pTH1731 )  (BEEML-PBM)
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Primary PWM
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Consensus
NTAATKANNN
NNNTMATTAN
Primary Motif (clone pTH3733 )  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
ATAATGAG (E.S. 0.49896)
CTCATTAT (E.S. 0.49896)
Primary Motif (clone pTH3733 )  (BEEML-PBM)
Image Not Available. We apologize for the inconvenience.
Primary PWM
View
Consensus
NTAATKANNN
NNNTMATTAN
Downloads
Download the zip of all Pou6f1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Pou6f1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=146&sourceDB=uniprobe
-Pou6f1 Datasets
Clone ID Expression Expression Method Save View
pTH1731 #1 E. coli save search
pTH3733 #1 E. coli save search
Clone pTH1731 insert sequence
1    TVSQLVSKPH TPSLDEDGIN LEEIREFAKN FKIRRLSLGL TQTQVGQALT
51   ATEGPAYSQS AICRFEKLDI TPKSAQKLKP VLEKWLMEAE LRNQEGQQNL
101  MEFVGGEPSK KRKRRTSFTP QAIEALNAYF EKNPLPTGQE ITEIAKELNY
151  DREVVRVWFC NRRQTLKNTS KLNVFQIP
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


Clone pTH3733 insert sequence
1    LVPPSGLEPH TPSLDEDGIN LEEIREFAKN FKIRRLSLGL TQTQVGQALT
51   ATEGPAYSQS AICRFEKLDI TPKSAQKLKP VLEKWLMEAE LRNQEGQQNL
101  MEFVGGEPSK KRKRRTSFTP QAIEALNAYF EKNPLPTGQE ITEIAKELNY
151  DREVVRVWFC NRRQTLKNTS KLNVFQIP
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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