-Genomic Data Links
Protein
Nkx2-6
UniPROBE Accession Number
UP00147
Species
Mus musculus
Domain
Homeobox
Uniprot
P43688
Name and Synonyms
NK2 transcription factor related, locus 6 (Drosophila)
AV044928, Homeobox protein NK-2 homolog F, Homeobox protein Nkx-2.6, Nkx2.6, Nkx-2.6, Nkx2f, tinman, Tix
IHOP
123146
Description
None Available
RefSeq
NP_035050
Nkx2-6 DNA binding domain
1   RKSRVLFSQA QVLALERRFK QQRYLTAPER EHLASALQLT STQVKIWFQN
51  RRYKSKS
JASPAR
None Available
-PBM Motif Data for Nkx2-6
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CCACTTAA (E.S. 0.49814)
TTAAGTGG (E.S. 0.49814)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNVYACTTVD
HBAAGTRBNN
Downloads
Download the zip of all Nkx2-6 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Nkx2-6 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=147&sourceDB=uniprobe
-Nkx2-6 Datasets
Clone ID Expression Expression Method Save View
pTH3437 #1 E. coli save search
Clone pTH3437 insert sequence
1   GDMRRGGPVS TRTRPQRKSR VLFSQAQVLA LERRFKQQRY LTAPEREHLA
51  SALQLTSTQV KIWFQNRRYK SKSQRQDQTL ELAGHPLAPR RVA
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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