-Genomic Data Links
Protein
Phox2b
UniPROBE Accession Number
UP00149
Species
Mus musculus
Domain
Homeobox
Uniprot
O35690
Name and Synonyms
paired-like homeobox 2b
Dilp1, GENA 269, NBPhox, Neuroblastoma Phox, Paired-like homeobox 2B, Paired mesoderm homeobox protein 2B, PHOX2B homeodomain protein, Pmx2b
IHOP
123643
Description
None Available
RefSeq
NP_032914
Phox2b DNA binding domain
1   RRIRTTFTSA QLKELERVFA ETHYPDIYTR EELALKIDLT EARVQVWFQN
51  RRAKFRK
JASPAR
None Available
-PBM Motif Data for Phox2b
Primary Motif  (Seed-and-Wobble)
Image Not Available. We apologize for the inconvenience.
Primary PWM
View       Save
Top Kmer
TTAATTAA (E.S. 0.49870)
TTAATTAA (E.S. 0.49870)
Primary Motif  (BEEML-PBM)
Image Not Available. We apologize for the inconvenience.
Primary PWM
View
Consensus
NNHRAYNNNN
NNNNRTYDNN
Downloads
Download the zip of all Phox2b PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Phox2b in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=149&sourceDB=uniprobe
-Phox2b Datasets
Clone ID Expression Expression Method Save View
pTH3948 #1 IVT save search
Clone pTH3948 insert sequence
1   YKLFTDHGGL NEKRKQRRIR TTFTSAQLKE LERVFAETHY PDIYTREELA
51  LKIDLTEARV QVWFQNRRAK FRKQERAAAA AAAAAKNGSS GKK
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


Supported Browsers:IE 7.0.6001.18000, Firefox 3.5.11, Google Chrome 5.0.375.125 beta