-Genomic Data Links
Protein
Irx6
UniPROBE Accession Number
UP00150
Species
Mus musculus
Domain
Homeobox
Uniprot
Q9ER75
Name and Synonyms
Iroquois related homeobox 6 (Drosophila)
Homeodomain protein IRXB3, Iroquois-class homeodomain protein IRX-6, Iroquois homeobox protein 6, Irxb3
IHOP
132514
Description
None Available
RefSeq
NP_071873
Irx6 DNA binding domain
1   RKNATRESTS ALKAWLHEHR KNPYPTKGEK IMLAIITKMT LTQVSTWFAN
51  ARRRLKK
JASPAR
None Available
-PBM Motif Data for Irx6
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TACATGTA (E.S. 0.49615)
TACATGTA (E.S. 0.49615)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNWDWHNN
NNDWHWNNNN
Downloads
Download the zip of all Irx6 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Irx6 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=150&sourceDB=uniprobe
-Irx6 Datasets
Clone ID Expression Expression Method Save View
pTH2623 #1 E. coli save search
Clone pTH2623 insert sequence
1   LGQYQYDRYG GVELSSAGRR KNATRESTSA LKAWLHEHRK NPYPTKGEKI
51  MLAIITKMTL TQVSTWFANA RRRLKKENKM TWAPKNKGGE ERKADS
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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