-Genomic Data Links
Protein
Hmx2
UniPROBE Accession Number
UP00155
Species
Mus musculus
Domain
Homeobox
Uniprot
P43687
Name and Synonyms
H6 homeo box 2
Homeobox protein HMX2, Homeobox protein Nkx-5.2, MGC32455, Nkx-5.2, Nkx5-2
IHOP
121708
Description
None Available
RefSeq
NP_666110
Hmx2 DNA binding domain
1   KKTRTVFSRS QVYQLESTFD MKRYLSSSER ACLASSLQLT ETQVKTWFQN
51  RRNKWKR
JASPAR
None Available
-PBM Motif Data for Hmx2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
A.CAATTAA (E.S. 0.49870)
TTAATTG.T (E.S. 0.49870)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNCRNTYDN
NHRANYGNNN
Downloads
Download the zip of all Hmx2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hmx2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=155&sourceDB=uniprobe
-Hmx2 Datasets
Clone ID Expression Expression Method Save View
pTH3424 #1 E. coli save search
Clone pTH3424 insert sequence
1   ERPRDGGAER QTGAAKKKTR TVFSRSQVYQ LESTFDMKRY LSSSERACLA
51  SSLQLTETQV KTWFQNRRNK WKRQLSAELE AANMAHASAQ TLV
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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