-Genomic Data Links
Protein
Hmx3
UniPROBE Accession Number
UP00157
Species
Mus musculus
Domain
Homeobox
Uniprot
P42581
Name and Synonyms
H6 homeo box 3
Homeobox protein HMX3, Homeobox protein Nkx-5.1, Nkx5.1, Nkx-5.1, Nkx5-1
IHOP
121709
Description
None Available
RefSeq
NP_032283
Hmx3 DNA binding domain
1   KKTRTVFSRS QVFQLESTFD MKRYLSSSER AGLAASLHLT ETQVKIWFQN
51  RRNKWKR
JASPAR
None Available
-PBM Motif Data for Hmx3
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
A.CAATTAA (E.S. 0.49862)
TTAATTG.T (E.S. 0.49862)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNYRHTHDN
NHDADYRNNN
Downloads
Download the zip of all Hmx3 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hmx3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=157&sourceDB=uniprobe
-Hmx3 Datasets
Clone ID Expression Expression Method Save View
pTH3490 #1 E. coli save search
Clone pTH3490 insert sequence
1   WKAGAESPEK KPACRKKKTR TVFSRSQVFQ LESTFDMKRY LSSSERAGLA
51  ASLHLTETQV KIWFQNRRNK WKRQLAAELE AANLSHAAAQ RIV

References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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