-Genomic Data Links
Protein
Obox3
UniPROBE Accession Number
UP00160
Species
Mus musculus
Domain
Homeobox
Uniprot
Q8VHG6
Name and Synonyms
oocyte specific homeobox 3
None Available
IHOP
155887
Description
None Available
RefSeq
NP_663753
Obox3 DNA binding domain
1   RKERTVYSKE QQCLLQKHFD EFQYPNEKKI VELALSVGVT KREIKIWFKN
51  NRAKYRR
JASPAR
None Available
-PBM Motif Data for Obox3
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GGGGATTA (E.S. 0.49777)
TAATCCCC (E.S. 0.49777)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNATHDNN
NNHDATNNNN
Downloads
Download the zip of all Obox3 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Obox3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=160&sourceDB=uniprobe
-Obox3 Datasets
Clone ID Expression Expression Method Save View
pTH3439 #1 E. coli save search
Clone pTH3439 insert sequence
1   DRYVNKQTGP MALRKFRKER TVYSKEQQCL LQKHFDEFQY PNEKKIVELA
51  LSVGVTKREI KIWFKNNRAK YRRMKLQNIK QALPETNESS KAV
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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