-Genomic Data Links
Protein
Hoxc13
UniPROBE Accession Number
UP00173
Species
Mus musculus
Domain
Homeobox
Uniprot
P50207
Name and Synonyms
homeo box C13
Homeobox protein Hox-C13, Hoxc-13
IHOP
121745
Description
None Available
RefSeq
NP_034594
Hoxc13 DNA binding domain
1   RKKRVPYTKV QLKELEKEYA ASKFITKEKR RRISATTNLS ERQVTIWFQN
51  RRVKEKK
JASPAR
None Available
-PBM Motif Data for Hoxc13
Primary Motif  (Seed-and-Wobble)
Image Not Available. We apologize for the inconvenience.
Primary PWM
View       Save
Top Kmer
CTCGTAAA (E.S. 0.49847)
TTTACGAG (E.S. 0.49847)
Primary Motif  (BEEML-PBM)
Image Not Available. We apologize for the inconvenience.
Primary PWM
View
Consensus
NNYHRTWAAN
NTTWAYDRNN
Downloads
Download the zip of all Hoxc13 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxc13 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=173&sourceDB=uniprobe
-Hoxc13 Datasets
Clone ID Expression Expression Method Save View
pTH3127 #1 IVT save search
Clone pTH3127 insert sequence
1   PDVVPLQPEV SSYRRGRKKR VPYTKVQLKE LEKEYAASKF ITKEKRRRIS
51  ATTNLSERQV TIWFQNRRVK EKKVVSKSKA PHLHST
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


Supported Browsers:IE 7.0.6001.18000, Firefox 3.5.11, Google Chrome 5.0.375.125 beta