-Genomic Data Links
Protein
Crx
UniPROBE Accession Number
UP00176
Species
Mus musculus
Domain
Homeobox
Uniprot
O54751
Name and Synonyms
cone-rod homeobox containing gene
Cone-rod homeobox protein
IHOP
120253
Description
None Available
RefSeq
NP_031796
Crx DNA binding domain
1   RRERTTFTRS QLEELEALFA KTQYPDVYAR EEVALKINLP ESRVQVWFKN
51  RRAKCRQ
JASPAR
None Available
-PBM Motif Data for Crx
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
G.GGATTA.C (E.S. 0.49762)
G.TAATCC.C (E.S. 0.49762)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNWAAKHBNN
NNVDMTTWNN
Downloads
Download the zip of all Crx PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Crx in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=176&sourceDB=uniprobe
-Crx Datasets
Clone ID Expression Expression Method Save View
pTH3485 #1 IVT save search
Clone pTH3485 insert sequence
1   DLMHQAVPYS SAPRKQRRER TTFTRSQLEE LEALFAKTQY PDVYAREEVA
51  LKINLPESRV QVWFKNRRAK CRQQRQQQKQ QQQPPGAQTK ARP
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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