-Genomic Data Links
Protein
Hoxa6
UniPROBE Accession Number
UP00182
Species
Mus musculus
Domain
Homeobox
Uniprot
P09092
Name and Synonyms
homeo box A6
Homeobox protein Hox-A6, Hox-1.2, Hoxa-6, M5-4
IHOP
121731
Description
None Available
RefSeq
NP_034584
Hoxa6 DNA binding domain
1   RRGRQTYTRY QTLELEKEFH FNRYLTRRRR IEIANALCLT ERQIKIWFQN
51  RRMKWKK
JASPAR
None Available
-PBM Motif Data for Hoxa6
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
G.TAATTA.C (E.S. 0.49790)
G.TAATTA.C (E.S. 0.49790)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NWWATKRNNN
NNNYMATWWN
Downloads
Download the zip of all Hoxa6 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxa6 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=182&sourceDB=uniprobe
-Hoxa6 Datasets
Clone ID Expression Expression Method Save View
pTH1040 #1 IVT save search
Clone pTH1040 insert sequence
1   MQRMNSCAGA VYGSHGRRGR QTYTRYQTLE LEKEFHFNRY LTRRRRIEIA
51  NALCLTERQI KIWFQNRRMK WKKENKLINS TQASGEDSEA KAG
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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