-Genomic Data Links
Protein
Lmx1a
UniPROBE Accession Number
UP00188
Species
Mus musculus
Domain
Homeobox
Uniprot
Q9JKU8
Name and Synonyms
LIM homeobox transcription factor 1 alpha
dr, dreher, LIM/homeobox protein LMX1A, LIM-homeobox protein 1.1, Lmx1.1, LMX-1.1, MGC129356, MGC129357, shaker short-tail, sst
IHOP
148022
Description
None Available
RefSeq
NP_387501
Lmx1a DNA binding domain
1   KRPRTILTTQ QRRAFKASFE VSSKPCRKVR ETLAAETGLS VRVVQVWFQN
51  QRAKMKK
JASPAR
None Available
-PBM Motif Data for Lmx1a
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49979)
TTAATTAA (E.S. 0.49979)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNYMATHNNN
NNNDATKRNN
Downloads
Download the zip of all Lmx1a PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Lmx1a in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=188&sourceDB=uniprobe
-Lmx1a Datasets
Clone ID Expression Expression Method Save View
pTH2238 #1 E. coli save search
Clone pTH2238 insert sequence
1   GAGKGASEDG KDHKRPKRPR TILTTQQRRA FKASFEVSSK PCRKVRETLA
51  AETGLSVRVV QVWFQNQRAK MKKLARRQQQ QQQDQQNTQR LTS
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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