-Genomic Data Links
Protein
Hoxa5
UniPROBE Accession Number
UP00189
Species
Mus musculus
Domain
Homeobox
Uniprot
P09021
Name and Synonyms
homeo box A5
Homeobox protein Hox-A5, Hox-1.3, Hoxa-5, M2
IHOP
121730
Description
None Available
RefSeq
NP_034583
Hoxa5 DNA binding domain
1   KRARTAYTRY QTLELEKEFH FNRYLTRRRR IEIAHALCLS ERQIKIWFQN
51  RRMKWKK
JASPAR
None Available
-PBM Motif Data for Hoxa5
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
G.TAATTA.C (E.S. 0.49805)
G.TAATTA.C (E.S. 0.49805)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNWAATNDNN
NNHNATTWNN
Downloads
Download the zip of all Hoxa5 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxa5 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=189&sourceDB=uniprobe
-Hoxa5 Datasets
Clone ID Expression Expression Method Save View
pTH3415 #1 E. coli save search
Clone pTH3415 insert sequence
1   MRKLHISHDN IGGPEGKRAR TAYTRYQTLE LEKEFHFNRY LTRRRRIEIA
51  HALCLSERQI KIWFQNRRMK WKKDNKLKSM SMAAAGGAFR P
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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