-Genomic Data Links
Protein
Irx4
UniPROBE Accession Number
UP00194
Species
Mus musculus
Domain
Homeobox
Uniprot
Q9QY61
Name and Synonyms
Iroquois related homeobox 4 (Drosophila)
Homeodomain protein IRXA3, Iroquois-class homeodomain protein IRX-4, Iroquois homeobox protein 4, Irxa3
IHOP
127557
Description
None Available
RefSeq
NP_061373
Irx4 DNA binding domain
1   RKNATRETTS TLKAWLQEHR KNPYPTKGEK IMLAIITKMT LTQVSTWFAN
51  ARRRLKK
JASPAR
None Available
-PBM Motif Data for Irx4
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TACATGTA (E.S. 0.49066)
TACATGTA (E.S. 0.49066)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNWKTHNN
NNDAMWNNNN
Downloads
Download the zip of all Irx4 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Irx4 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=194&sourceDB=uniprobe
-Irx4 Datasets
Clone ID Expression Expression Method Save View
pTH2242 #1 E. coli save search
Clone pTH2242 insert sequence
1   PALSQYPYDR YGTVDSGTRR KNATRETTST LKAWLQEHRK NPYPTKGEKI
51  MLAIITKMTL TQVSTWFANA RRRLKKENKM TWPPRNKCAD EKRPYG
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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