-Genomic Data Links
Protein
Six3
UniPROBE Accession Number
UP00195
Species
Mus musculus
Domain
Homeobox
Uniprot
Q62233
Name and Synonyms
sine oculis-related homeobox 3 homolog (Drosophila)
Homeobox protein SIX3, Sine oculis homeobox homolog 3, Six3a, Six3alpha, Six3b, Six3beta
IHOP
124635
Description
Mus musculus sine oculis-related homeobox 3 homolog (Drosophila) (Six3), mRNA.
RefSeq
NP_035511
Six3 DNA binding domain
1   EQKTHCFKER TRSLLREWYL QDPYPNPSKK RELAQATGLT PTQVGNWFKN
51  RRQRDRA
JASPAR
None Available
-PBM Motif Data for Six3
Primary Motif  (Seed-and-Wobble)
Image Not Available. We apologize for the inconvenience.
Primary PWM
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Top Kmer
GGGTATCA (E.S. 0.49596)
TGATACCC (E.S. 0.49596)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNAYMNNNN
NNNNKRTNNN
Downloads
Download the zip of all Six3 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Six3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=195&sourceDB=uniprobe
-Six3 Datasets
Clone ID Expression Expression Method Save View
pTH1732 #1 E. coli save search
Clone pTH1732 insert sequence
1   RVRKKFPLPR TIWDGEQKTH CFKERTRSLL REWYLQDPYP NPSKKRELAQ
51  ATGLTPTQVG NWFKNRRQRD RAAAAKNRLQ HQAIGPSGMR SL
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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