-Genomic Data Links
Protein
Hoxc9
UniPROBE Accession Number
UP00197
Species
Mus musculus
Domain
Homeobox
Uniprot
P09633
Name and Synonyms
homeo box C9
Homeobox protein Hox-C9, Hox-3.2, Hoxc-9
IHOP
121750
Description
None Available
RefSeq
NP_032298
Hoxc9 DNA binding domain
1   RKRRCPYTKY QTLELEKEFL FNMYLTRDRR YEVARVLNLT ERQVKIWFQN
51  RRMKMKK
JASPAR
None Available
-PBM Motif Data for Hoxc9
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GTCATTAA (E.S. 0.49227)
TTAATGAC (E.S. 0.49227)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNVNNNNN
NNNNNBNNNN
Downloads
Download the zip of all Hoxc9 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxc9 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=197&sourceDB=uniprobe
-Hoxc9 Datasets
Clone ID Expression Expression Method Save View
pTH2367 #1 E. coli save search
Clone pTH2367 insert sequence
1   LDPSNPVANW IHARSTRKRR CPYTKYQTLE LEKEFLFNMY LTRDRRYEVA
51  RVLNLTERQV KIWFQNRRMK MKKMNKEKTD KEQS
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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