-Genomic Data Links
Protein
Nkx6-1
UniPROBE Accession Number
UP00200
Species
Mus musculus
Domain
Homeobox
Uniprot
Q99MA9
Name and Synonyms
NK6 transcription factor related, locus 1 (Drosophila)
Homeobox protein Nkx-6.1, Nkx6.1, Nkx6a, NKX6A
IHOP
123149
Description
None Available
RefSeq
NP_659204
Nkx6-1 DNA binding domain
1   KHTRPTFSGQ QIFALEKTFE QTKYLAGPER ARLAYSLGMT ESQVKVWFQN
51  RRTKWRK
JASPAR
None Available
-PBM Motif Data for Nkx6-1
Primary Motif (clone pTH2825 , expression 1 )  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
ATTAATTA (E.S. 0.49813)
TAATTAAT (E.S. 0.49813)
Primary Motif (clone pTH2825 , expression 2 )  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
ATTAATTA (E.S. 0.49783)
TAATTAAT (E.S. 0.49783)
Primary Motif (clone pTH2825 )  (BEEML-PBM)
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Primary PWM
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Consensus
NDHDATNRNN
NNYNATHDHN
Downloads
Download the zip of all Nkx6-1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Nkx6-1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=200&sourceDB=uniprobe
-Nkx6-1 Datasets
Clone ID Expression Expression Method Save View
pTH2825 #1 E. coli save search
pTH2825 #2 E. coli save search
Clone pTH2825 insert sequence
1   LACTPHQGSI LLDKDGKRKH TRPTFSGQQI FALEKTFEQT KYLAGPERAR
51  LAYSLGMTES QVKVWFQNRR TKWRKKHAAE MATAKKKQDS ETERL
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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