-Genomic Data Links
Protein
Gbx1
UniPROBE Accession Number
UP00204
Species
Mus musculus
Domain
Homeobox
Uniprot
P82976
Name and Synonyms
gastrulation brain homeobox 1
Gastrulation and brain-specific homeobox protein 1, Homeobox protein GBX-1
IHOP
153710
Description
None Available
RefSeq
NP_056554
Gbx1 DNA binding domain
1   RRRRTAFTSE QLLELEKEFH CKKYLSLTER SQIAHALKLS EVQVKIWFQN
51  RRAKWKR
JASPAR
None Available
-PBM Motif Data for Gbx1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTAATTAG (E.S. 0.49711)
CTAATTAG (E.S. 0.49711)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNYNATTANN
NNTAATNRNN
Downloads
Download the zip of all Gbx1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Gbx1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=204&sourceDB=uniprobe
-Gbx1 Datasets
Clone ID Expression Expression Method Save View
pTH2883 #1 E. coli save search
Clone pTH2883 insert sequence
1   EGTPVATGVT TPGGKSRRRR TAFTSEQLLE LEKEFHCKKY LSLTERSQIA
51  HALKLSEVQV KIWFQNRRAK WKRIKAGNVS SRSGEPVRNP KIV
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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