-Genomic Data Links
Protein
Vax1
UniPROBE Accession Number
UP00215
Species
Mus musculus
Domain
Homeobox
Uniprot
Q2NKI2
Name and Synonyms
ventral anterior homeobox containing gene 1
None Available
IHOP
125884
Description
None Available
RefSeq
NP_033527
Vax1 DNA binding domain
1   KRTRTSFTAE QLYRLEMEFQ RCQYVVGRER TELARQLNLS ETQVKVWFQN
51  RRTKQKK
JASPAR
None Available
-PBM Motif Data for Vax1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
G.TAATTA.C (E.S. 0.49766)
G.TAATTA.C (E.S. 0.49766)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNTAATNDNN
NNHNATTANN
Downloads
Download the zip of all Vax1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Vax1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=215&sourceDB=uniprobe
-Vax1 Datasets
Clone ID Expression Expression Method Save View
pTH3499 #1 IVT save search
Clone pTH3499 insert sequence
1   SIREIILPKG LDLDRPKRTR TSFTAEQLYR LEMEFQRCQY VVGRERTELA
51  RQLNLSETQV KVWFQNRRTK QKKDQGKDSE LRSVVSETAA TCS
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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