-Genomic Data Links
Protein
Obox1
UniPROBE Accession Number
UP00216
Species
Mus musculus
Domain
Homeobox
Uniprot
Q9D350
Name and Synonyms
oocyte specific homeobox 1
7420700M11Rik, AU015708, AU024152
IHOP
136348
Description
None Available
RefSeq
NP_082078
Obox1 DNA binding domain
1   RKERTVYTKE QQGLLQKHFD ECQYPNKKKI VELALSVGVT KREIKIWFKN
51  NRAKYRR
JASPAR
None Available
-PBM Motif Data for Obox1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GGGGATTA (E.S. 0.49897)
TAATCCCC (E.S. 0.49897)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNRGATTAN
NTAATCYNNN
Downloads
Download the zip of all Obox1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Obox1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=216&sourceDB=uniprobe
-Obox1 Datasets
Clone ID Expression Expression Method Save View
pTH3970 #1 E. coli save search
Clone pTH3970 insert sequence
1    MAEGPSLHPK LQVDSNIPIE ISSQIPQEPA RNLAFQMRQS PLVTPGSTTK
51   SSLSVPERNL LKQESQGPSR QSGCMLLSDK YVNKQTGPMA SRKFRKERTV
101  YTKEQQGLLQ KHFDECQYPN KKKIVELALS VGVTKREIKI WFKNNRAKYR
151  RMNLQNIEQV LPESNGSSKA VSESTHFPVV ASDNGESMCS GTFGEDSIPK
201  FNCS
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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