-Genomic Data Links
Protein
Hoxa10
UniPROBE Accession Number
UP00217
Species
Mus musculus
Domain
Homeobox
Uniprot
P31310
Name and Synonyms
homeo box A10
Homeobox protein Hox-A10, Hox-1.8, Hoxa-10
IHOP
121723
Description
None Available
RefSeq
NP_032289
Hoxa10 DNA binding domain
1   RKKRCPYTKH QTLELEKEFL FNMYLTRERR LEISRSVHLT DRQVKIWFQN
51  RRMKLKK
JASPAR
None Available
-PBM Motif Data for Hoxa10
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GT.ATAAAA (E.S. 0.49249)
TTTTAT.AC (E.S. 0.49249)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNRTWDNN
NNHWAYNNNN
Downloads
Download the zip of all Hoxa10 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxa10 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=217&sourceDB=uniprobe
-Hoxa10 Datasets
Clone ID Expression Expression Method Save View
pTH2318 #1 IVT save search
Clone pTH2318 insert sequence
1   SSKGENAANW LTAKSGRKKR CPYTKHQTLE LEKEFLFNMY LTRERRLEIS
51  RSVHLTDRQV KIWFQNRRMK LKKMNRENRI RELTANFNFS
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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