-Genomic Data Links
Protein
Nkx1-1
UniPROBE Accession Number
UP00220
Species
Mus musculus
Domain
Homeobox
Uniprot
O08713
Name and Synonyms
NK1 transcription factor related, locus 1 (Drosophila)
Nkx-1.1, Sax2
IHOP
124453
Description
None Available
RefSeq
XP_992115
Nkx1-1 DNA binding domain
1   RRARTAFTYE QLVALENKFK ATRYLSVCER LNLALSLSLT ETQVKIWFQN
51  RRTKWKK
JASPAR
None Available
-PBM Motif Data for Nkx1-1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTAATTAG (E.S. 0.49848)
CTAATTAG (E.S. 0.49848)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNHNATTANN
NNTAATNDNN
Downloads
Download the zip of all Nkx1-1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Nkx1-1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=220&sourceDB=uniprobe
-Nkx1-1 Datasets
Clone ID Expression Expression Method Save View
pTH3856 #1 E. coli save search
Clone pTH3856 insert sequence
1    MDGRAELPIF PRAGVPPLAA SDTVPAVPEG AGAARPAAPP RPTSFSVLDI
51   LDPNKFNSRR RRCVLLGPVV PATCAPCAPA ACVAVPAASG RSPRAELERR
101  ALSAATGVAA AAGAEPTSAG DSYRADEAEA NGYSSGSGRS PTADSEDEAP
151  EDEDEEEAPE VQDAQGTEEP RGGSGGLGAR GSGCPGAAEV EASPVDDTAA
201  PGPRGNSPGA PGPPATATGA GSAGSTPQGA AVTTKPKRKR TGSDSKSGKP
251  RRARTAFTYE QLVALENKFK ATRYLSVCER LNLALSLSLT ETQVKIWFQN
301  RRTKWKKQNP GADTSAPTGG GGGPGPGAGP GAGLPGGLSP LSPSPPMGAP
351  LALHGPAGYP AHSPGGLVCA AQLPFLSSPA VLSPFVLGSQ TYGAPAFYAP
401  HL
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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