-Genomic Data Links
Protein
Tcf2
UniPROBE Accession Number
UP00222
Species
Mus musculus
Domain
Homeobox
Uniprot
P27889
Name and Synonyms
transcription factor 2
AI385728, AI987804, Hepatocyte nuclear factor 1-beta, hepatocyte nuclear factor-1 beta, Hnf1b, Hnf-1b, HNF-1B, Hnf1beta, HNF-1beta, HNF-1Beta, Homeoprotein LFB3, Tcf-2, Variant hepatic nuclear factor 1, vHNF1, VHNF1
IHOP
125381
Description
TCF2 gene, VIRTUAL TRANSCRIPT, partial sequence, genomic survey sequence
RefSeq
NP_033356
Tcf2 DNA binding domain
1   RRNRFKWGPA SQQILYQAYD RQKNPSKEER EALVEECNRA ECLQRGVSPS
51  KAHGLGSNLV TEVRVYNWFA NRRKEEAF
JASPAR
None Available
-PBM Motif Data for Tcf2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GTTAACTA (E.S. 0.49582)
TAGTTAAC (E.S. 0.49582)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNHWYNNNN
NNNNRWDNNN
Downloads
Download the zip of all Tcf2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Tcf2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=222&sourceDB=uniprobe
-Tcf2 Datasets
Clone ID Expression Expression Method Save View
pTH913 #1 E. coli save search
Clone pTH913 insert sequence
1    PGQSEDTCSE PTNKKMRRNR FKWGPASQQI LYQAYDRQKN PSKEEREALV
51   EECNRAECLQ RGVSPSKAHG LGSNLVTEVR VYNWFANRRK EEAFRQKLAM
101  DACSSNQTHN LNPL
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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