-Genomic Data Links
Protein
Duxl
UniPROBE Accession Number
UP00227
Species
Mus musculus
Domain
Homeobox
Uniprot
Q3UY88
Name and Synonyms
RIKEN cDNA 1110051B16 gene
None Available
IHOP
158110
Description
None Available
RefSeq
NP_899245
Duxl DNA binding domain
1   RRSRTHFTKF QTDILIEAFE KNRFPGIVTR EKLAQQTGIP ESRIHIWFQN
51  RRARHPD
JASPAR
None Available
-PBM Motif Data for Duxl
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
A..CAATCAA (E.S. 0.49681)
TTGATTG..T (E.S. 0.49681)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNYMATCAN
NTGATKRNNN
Downloads
Download the zip of all Duxl PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Duxl in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=227&sourceDB=uniprobe
-Duxl Datasets
Clone ID Expression Expression Method Save View
pTH1286 #1 E. coli save search
Clone pTH1286 insert sequence
1    ELSCXTGLLE KEARRRRIIL TQSQKDTLRV WFEKNPNPDL ATRGHLAKEL
51   GISESQIMTW FQKHRKIRKQ AEFACCSEES QEQEQDKPRV KEARRSRTHF
101  TKFQTDILIE AFEKNRFPGI VTREKLAQQT GIPESRIHIW FQNRRARHPD
151  PGQNTQKTPH PPQSSQGPTQ
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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