-Genomic Data Links
Protein
Otx1
UniPROBE Accession Number
UP00229
Species
Mus musculus
Domain
Homeobox
Uniprot
P80205
Name and Synonyms
orthodenticle homolog 1 (Drosophila)
A730044F23Rik, Homeobox protein OTX1, jv, Otx-1
IHOP
123362
Description
None Available
RefSeq
NP_035153
Otx1 DNA binding domain
1   RRERTTFTRS QLDVLEALFA KTRYPDIFMR EEVALKINLP ESRVQVWFKN
51  RRAKCRQ
JASPAR
None Available
-PBM Motif Data for Otx1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
G.GGATTAA (E.S. 0.49762)
TTAATCC.C (E.S. 0.49762)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNRDMTTANN
NNTAAKHYNN
Downloads
Download the zip of all Otx1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Otx1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=229&sourceDB=uniprobe
-Otx1 Datasets
Clone ID Expression Expression Method Save View
pTH2325 #1 IVT save search
Clone pTH2325 insert sequence
1   DLLHPSVGYP ATPRKQRRER TTFTRSQLDV LEALFAKTRY PDIFMREEVA
51  LKINLPESRV QVWFKNRRAK CRQQQQSGNG TKTRPVKKKS SPV
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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