-Genomic Data Links
Protein
Hoxc11
UniPROBE Accession Number
UP00235
Species
Mus musculus
Domain
Homeobox
Uniprot
P31312
Name and Synonyms
homeo box C11
Homeobox protein Hox-C11, Hox-3.7, Hoxc-11
IHOP
147161
Description
None Available
RefSeq
NP_001020013
Hoxc11 DNA binding domain
1   RKKRCPYSKF QIRELEREFF FNVYINKEKR LQLSRMLNLT DRQVKIWFQN
51  RRMKEKK
JASPAR
None Available
-PBM Motif Data for Hoxc11
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GTCGTAAA (E.S. 0.49823)
TTTACGAC (E.S. 0.49823)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NWTWAYDDBN
NVHHRTWAWN
Downloads
Download the zip of all Hoxc11 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxc11 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=235&sourceDB=uniprobe
-Hoxc11 Datasets
Clone ID Expression Expression Method Save View
pTH3718 #1 E. coli save search
Clone pTH3718 insert sequence
1    MFNSVNLGNF CSPSRKERGA DFGERGSCTS NLYLPSCTYY VPEFSTVSSF
51   LPQAPSRQIS YPYSAQVPPV REVSYGLEPS GKWHHRNSYS SCYAAADELM
101  HRECLPPSTV TEILMKNEGS YGGHHHPSAP HAAPAGFYSS VNKNSVLPQA
151  FDRFFDNAYC GGGDAPAEPP CSGKGEAKGE PEAPPASGLA SRAEAGAEAE
201  AEEENTNPSS SGSSHSATKE PAKGAAPNAP RTRKKRCPYS KFQIRELERE
251  FFFNVYINKE KRLQLSRMLN LTDRQVKIWF QNRRMKEKKL SRDRLQYFSG
301  NPLL
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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