-Genomic Data Links
Protein
Cdx1
UniPROBE Accession Number
UP00240
Species
Mus musculus
Domain
Homeobox
Uniprot
P18111
Name and Synonyms
caudal type homeo box 1
Caudal-type homeobox protein 1, Cdx, Cdx-1, Homeobox protein CDX-1
IHOP
120010
Description
None Available
RefSeq
NP_034010
Cdx1 DNA binding domain
1   DKYRVVYTDH QRLELEKEFH YSRYITIRRK SELAANLGLT ERQVKIWFQN
51  RRAKERK
JASPAR
None Available
-PBM Motif Data for Cdx1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GGT.ATAAA (E.S. 0.49620)
TTTAT.ACC (E.S. 0.49620)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNYHATWWNN
NNWWATDRNN
Downloads
Download the zip of all Cdx1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Cdx1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=240&sourceDB=uniprobe
-Cdx1 Datasets
Clone ID Expression Expression Method Save View
pTH2245 #1 IVT save search
Clone pTH2245 insert sequence
1   SVAAAGGGGS GKTRTKDKYR VVYTDHQRLE LEKEFHYSRY ITIRRKSELA
51  ANLGLTERQV KIWFQNRRAK ERKVNKKKQQ QQQPLPPTQL PLP
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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