-Genomic Data Links
Protein
Isx
UniPROBE Accession Number
UP00243
Species
Mus musculus
Domain
Homeobox
Uniprot
A1A546
Name and Synonyms
intestine-specific homeobox
None Available
IHOP
None Available
Description
None Available
RefSeq
NP_082113
Isx DNA binding domain
1   RRVRTTFTTE QLQELEKLFH FTHYPDIHVR SQLASRINLP EARVQIWFQN
51  QRAKWRK
JASPAR
None Available
-PBM Motif Data for Isx
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTAATTAG (E.S. 0.49840)
CTAATTAG (E.S. 0.49840)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNATHWNN
NNWDATNNNN
Downloads
Download the zip of all Isx PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Isx in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=243&sourceDB=uniprobe
-Isx Datasets
Clone ID Expression Expression Method Save View
pTH3445 #1 IVT save search
Clone pTH3445 insert sequence
1   LERPPQDQPQ EEKKNKRRVR TTFTTEQLQE LEKLFHFTHY PDIHVRSQLA
51  SRINLPEARV QIWFQNQRAK WRKQEKSGNL SAPQQPGEAG LAL
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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