-Genomic Data Links
Protein
Irx5
UniPROBE Accession Number
UP00250
Species
Mus musculus
Domain
Homeobox
Uniprot
Q9JKQ4
Name and Synonyms
Iroquois related homeobox 5 (Drosophila)
Homeodomain protein IRXB2, Iroquois-class homeodomain protein IRX-5, Iroquois homeobox protein 5, Irxb2
IHOP
129059
Description
None Available
RefSeq
NP_061296
Irx5 DNA binding domain
1   PAYRKNATRD ATATLKAWLN EHRKNPYPTK GEKIMLAIIT KMTLTQVSTW
51  FANARRRLKK
JASPAR
None Available
-PBM Motif Data for Irx5
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TACATGTA (E.S. 0.49572)
TACATGTA (E.S. 0.49572)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNDACAHNNN
NNNDTGTHNN
Downloads
Download the zip of all Irx5 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Irx5 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=250&sourceDB=uniprobe
-Irx5 Datasets
Clone ID Expression Expression Method Save View
pTH2385 #1 IVT save search
Clone pTH2385 insert sequence
1   GYHPYAAPLG SYPYGDPAYR KNATRDATAT LKAWLNEHRK NPYPTKGEKI
51  MLAIITKMTL TQVSTWFANA RRRLKKENKM TWTPRNRSED EEEEEN
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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