-Genomic Data Links
Protein
Hoxc5
UniPROBE Accession Number
UP00252
Species
Mus musculus
Domain
Homeobox
Uniprot
P32043
Name and Synonyms
homeo box C5
AI181837, Homeobox protein Hox-C5, Hox-3.4, Hox-6.2, Hoxc-5
IHOP
121747
Description
None Available
RefSeq
NP_783857
Hoxc5 DNA binding domain
1   KRSRTSYTRY QTLELEKEFH FNRYLTRRRR IEIANNLCLN ERQIKIWFQN
51  RRMKWKK
JASPAR
None Available
-PBM Motif Data for Hoxc5
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49689)
TTAATTAA (E.S. 0.49689)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNHNATHWNN
NNWDATNDNN
Downloads
Download the zip of all Hoxc5 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxc5 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=252&sourceDB=uniprobe
-Hoxc5 Datasets
Clone ID Expression Expression Method Save View
pTH2630 #1 E. coli save search
Clone pTH2630 insert sequence
1   IYPWMTKLHM SHETDGKRSR TSYTRYQTLE LEKEFHFNRY LTRRRRIEIA
51  NNLCLNERQI KIWFQNRRMK WKKDSKMKSK EAL
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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