-Genomic Data Links
Protein
Hoxc6
UniPROBE Accession Number
UP00260
Species
Mus musculus
Domain
Homeobox
Uniprot
P10629
Name and Synonyms
homeo box C6
Homeobox protein Hox-C6, Hox-3.3, Hox-6.1, Hoxc-6
IHOP
121748
Description
None Available
RefSeq
NP_034595
Hoxc6 DNA binding domain
1   RRGRQIYSRY QTLELEKEFH FNRYLTRRRR IEIANALCLT ERQIKIWFQN
51  RRMKWKK
JASPAR
None Available
-PBM Motif Data for Hoxc6
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49474)
TTAATTAA (E.S. 0.49474)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNSNNNNN
NNNNNSNNNN
Downloads
Download the zip of all Hoxc6 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxc6 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=260&sourceDB=uniprobe
-Hoxc6 Datasets
Clone ID Expression Expression Method Save View
pTH3954 #1 E. coli save search
Clone pTH3954 insert sequence
1   MQRMNSHSGV GYGADRRRGR QIYSRYQTLE LEKEFHFNRY LTRRRRIEIA
51  NALCLTERQI KIWFQNRRMK WKKESNLTST LSGGGGGATA DSL
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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