-Genomic Data Links
Protein
Hoxb8
UniPROBE Accession Number
UP00263
Species
Mus musculus
Domain
Homeobox
Uniprot
P09632
Name and Synonyms
homeo box B8
Homeobox protein Hox-B8, Hox-2.4, Hoxb-8
IHOP
121742
Description
None Available
RefSeq
NP_034591
Hoxb8 DNA binding domain
1   RRGRQTYSRY QTLELEKEFL FNPYLTRKRR IEVSHALGLT ERQVKIWFQN
51  RRMKWKK
JASPAR
None Available
-PBM Motif Data for Hoxb8
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GCAATTAA (E.S. 0.49319)
TTAATTGC (E.S. 0.49319)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNHNRTWWN
NWWAYNDNNN
Downloads
Download the zip of all Hoxb8 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxb8 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=263&sourceDB=uniprobe
-Hoxb8 Datasets
Clone ID Expression Expression Method Save View
pTH3780 #1 E. coli save search
Clone pTH3780 insert sequence
1    MSSYFVNSLF SKYKTGESLR PNYYDCGFAQ DLGGRPTVVY GPSSGGSFQH
51   PSQIQEFYHG PSSLSTAPYQ QNPCAVACHG DPGNFYGYDP LQRQSLFGAQ
101  DPDLVQYADC KLAAASGLGE EAEGSEQSPS PTQLFPWMRP QAAAGRRRGR
151  QTYSRYQTLE LEKEFLFNPY LTRKRRIEVS HALGLTERQV KIWFQNRRMK
201  WKKENNKDKF PSSKCEQEEL EKEKLERAPE TAEQGDAQKG DKK
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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