-Genomic Data Links
Protein
Hoxa1
UniPROBE Accession Number
UP00264
Species
Mus musculus
Domain
Homeobox
Uniprot
P09022
Name and Synonyms
homeo box A1
early retinoic acid, Early retinoic acid 1, ERA1, Era-1, Homeoboxless protein ERA-1-399, Homeobox protein Hox-A1, Homeotic protein ERA-1-993, Hox-1.6, Hoxa-1
IHOP
121722
Description
None Available
RefSeq
NP_034579
Hoxa1 DNA binding domain
1   NAVRTNFTTK QLTELEKEFH FNKYLTRARR VEIAASLQLN ETQVKIWFQN
51  RRMKQKK
JASPAR
None Available
-PBM Motif Data for Hoxa1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GCTAATTA (E.S. 0.49763)
TAATTAGC (E.S. 0.49763)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNYVATTWN
NWAATBRNNN
Downloads
Download the zip of all Hoxa1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxa1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=264&sourceDB=uniprobe
-Hoxa1 Datasets
Clone ID Expression Expression Method Save View
pTH3425 #1 E. coli save search
Clone pTH3425 insert sequence
1   PPKTGKVGEY GYVGQPNAVR TNFTTKQLTE LEKEFHFNKY LTRARRVEIA
51  ASLQLNETQV KIWFQNRRMK QKKREKEGLL PISPATPPGS DEK
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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