-Genomic Data Links
Protein
Prrx1
UniPROBE Accession Number
UP00266
Species
Mus musculus
Domain
Homeobox
Uniprot
P63013
Name and Synonyms
paired related homeobox 1
A230024N07Rik, AA755424, AI385634, AI843499, Homeobox protein K-2, Homeobox protein mHox, K-2, mHox, Paired mesoderm homeobox protein 1, Paired-related homeobox protein 1, Pmx, Pmx1, Prx1, PRX-1
IHOP
123642
Description
None Available
RefSeq
NP_783617
Prrx1 DNA binding domain
1   RRNRTTFNSS QLQALERVFE RTHYPDAFVR EDLARRVNLT EARVQVWFQN
51  RRAKFRR
JASPAR
None Available
-PBM Motif Data for Prrx1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
A..TAATTAA (E.S. 0.49885)
TTAATTA..T (E.S. 0.49885)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNTAATDDNN
NNHHATTANN
Downloads
Download the zip of all Prrx1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Prrx1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=266&sourceDB=uniprobe
-Prrx1 Datasets
Clone ID Expression Expression Method Save View
pTH3442 #1 E. coli save search
Clone pTH3442 insert sequence
1   QDNDQLNSEE KKKRKQRRNR TTFNSSQLQA LERVFERTHY PDAFVREDLA
51  RRVNLTEARV QVWFQNRRAK FRRNERAMLA NKNASLLKSY SGD
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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