Protein Details

-Genomic Data for CUP9				Links
Protein CUP9	UniPROBE Accession Number UP00308	Species Saccharomyces cerevisiae	Domain Homeobox	Uniprot P41817
Synonyms Homeobox protein CUP9, YPL177C				IHOP 35964
Synonyms Homeobox protein CUP9, YPL177C				RefSeq NP_015148
Description Homeodomain-containing transcriptional repressor of PTR2, which encodes a major peptide transporter; imported peptides activate ubiquitin-dependent proteolysis, resulting in degradation of Cup9p an...				SGD YPL177C

-PBM Motif Data
Primary Motif (Seed-and-Wobble)				Primary PWM View Save
Primary Motif (Seed-and-Wobble)				Top Kmer ATGTGTCA E.S. 0.499 TGACACAT E.S. 0.499
Primary Motif (BEEML-PBM) (AMADID # 015681)				Primary PWM View
Primary Motif (BEEML-PBM) (AMADID # 015681)				Consensus NWGACAYWWH DWWRTGTCWN
Downloads Download the zip of all Cup9 PBM files or view the downloads directory for individual files.
Link to TFBSshape This link will take you to the corresponding entry for Cup9 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites. http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID308&sourceDB=uniprobe

-Annotations
Target Gene Functional Category Enrichment 1) FunSpec analysis run with p<0.005 without Bonferroni correction (view) 2) FunSpec analysis run with p<0.05 with Bonferroni correction (view)
Conditional Specificity 1) Specific conditions (view) 2) Condition categories (view)

-CUP9 Datasets
Clone ID	Clone Type	Last Modified	Save	View
y1002	Full length clone	2014-08-22
Insert sequence `1 MNYNCEIQNR NSKNVDNQVS LPPIQVLFNS IEKRSMPELA FSNIEYSHGN 51 LRSSTEEQNY PAPVLLPQHH SIAYPAINSG GTSTTATPTA STVETSKTSS 101 SAMDTQSQYG SSKKSKSASD DAKPCYKSAP IYEIINKEKD AGAQYNRPFS 151 DFVESKSRRK QNSGRRSNLP KETVQILNTW LLNHLNNPYP TQQEKRELLI 201 KTGLTKIQLS NWFINVRRRK IFSDYYTLVN SIPNDNANNT PVERVQNVSA 251 YHNTLSATNN TMYDATSTCS TDYELSKRFA HAPVTRRKKL IDRLEELKKL 301 SNPDMN`