Protein Details

-Genomic Data for RPH1				Links
Protein RPH1	UniPROBE Accession Number UP00348	Species Saccharomyces cerevisiae	Domain zf-C2H2	Uniprot P39956
Synonyms DNA damage-responsive transcriptional repressor RPH1, YER169W				IHOP 36880
				RefSeq NP_011096
Description Transcriptional repressor of PHR1, which is a photolyase induced by DNA damage; binds to AG(4) (C(4)T) sequence upstream of PHR1; Rph1p phosphorylation during DNA damage is under control of the MEC...				SGD YER169W

-PBM Motif Data
Primary Motif (Seed-and-Wobble)				Primary PWM View Save
Primary Motif (Seed-and-Wobble)				Top Kmer A.TTAGGGG E.S. 0.481 CCCCTAA.T E.S. 0.481
Primary Motif (BEEML-PBM) (AMADID # 015681)				Primary PWM View
Primary Motif (BEEML-PBM) (AMADID # 015681)				Consensus NNNNHRRRRR YYYYYDNNNN
Primary Motif (BEEML-PBM) (AMADID # 016060)				Primary PWM View
Primary Motif (BEEML-PBM) (AMADID # 016060)				Consensus RNVYNNNNNN NNNNNNRBNY
Downloads Download the zip of all Rph1 PBM files or view the downloads directory for individual files.
Link to TFBSshape This link will take you to the corresponding entry for Rph1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites. http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID348&sourceDB=uniprobe

-Annotations
Target Gene Functional Category Enrichment 1) FunSpec analysis run with p<0.005 without Bonferroni correction (view) 2) FunSpec analysis run with p<0.05 with Bonferroni correction (view)
Conditional Specificity 1) Specific conditions (view) 2) Condition categories (view)

-RPH1 Datasets
Clone ID	Clone Type	Last Modified	Save	View
y1026	Full length clone	2014-07-16
Insert sequence 1 MTKLIAPSEI VGGVPVFKPT YEQFEDFYAY CKAINKYGMK SGVVKVIPPK 51 EWKDKLDLPY SAETLQKIKI KSPIQQHISG NKGLFMVQNV EKNKTYNIIQ 101 WKDLSKDYVP PEDPKARRNS RKGSVSKSTK LKLKNFESSF NIDDFEQFRT 151 EYTIDLSDFQ NTERLKFLEE YYWKTLNFTT PMYGADTPGS IFPEGLNVWN 201 VAKLPNILDH METKVPGVND SYLYAGLWKA SFSWHLEDQD LYSINYIHFG 251 APKQWYSIPQ EDRFKFYKFM QEQFPEEAKN CPEFLRHKMF LASPKLLQEN 301 GIRCNEIVHH EGEFMITYPY GYHAGFNYGY NLAESVNFAL EEWLPIGKKA 351 GKCHCISDSV EIDVKKLAKS WRDNNKESKG TPPLNQLPNP AMPLLHRPTL 401 KEMESSSLRS TSPDVGHFSN FKSKSSGVSS PLLSRMKDYS NIVEPTLEDP 451 TLKLKRISSF QEQPLNKLLK RETSQTAMLT DHEDNIVAMS LTSMANSAAS 501 SPRLPLSRLN SSNELSNAQP LLDMTNNTLA FPRPNGPSGL NPLLYISNKN 551 ISGISHSAPH SPVNPNISLI KRVKSPNIVT LNISRESSRS PIALNYEARQ 601 QHSQQHSFST PSTVSNLSTS VLGPLSDTND IKTPHPERPN HKTANRILKK 651 ESPVETSKSN LILSKVASTR QEDSFTSRND DLDKEQGSSP LNSKFAPEEI 701 VLSGKNKIYI CKECQRKFSS GHHLTRHKKS VHSGEKPHSC PKCGKRFKRR 751 DHVLQHLNKK IPCISNETTV DAPIMNPTVQ PQDGKAAINQ QSTPLN