|
|
| -Genomic Data |
Links |
- Protein
- Smad3
|
- UniPROBE Accession Number
- UP00000
|
- Species
- Mus musculus
|
- Domain
- DWA
|
- Uniprot
-
Q8BUN5
|
- Name and Synonyms
-
MAD homolog 3 (Drosophila)
AU022421, Mad3, Madh3, mMad3, Mothers against decapentaplegic homolog 3, Mothers against DPP homolog 3, Smad 3, SMAD 3
|
- IHOP
-
122640
|
- RefSeq
-
NP_058049
|
- Description
- None Available
|
- JASPAR
-
N/A
|
| -PBM Motif Data for Smad3 |
- Primary Motif (Seed-And-Wobble)
-
|
- Primary PWM
-
View
Save
|
- Top Kmer
-
A.CCAGACA E.S. 0.493
TGTCTGG.T E.S. 0.493
|
- Secondary Motif (Seed-And-Wobble)
-
|
- Secondary PWM
-
View
Save
|
- Top Kmer
-
CCCGCCA..C E.S. 0.480
G..TGGCGGG E.S. 0.480
|
-
Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH3805)
-
|
- PWM
-
View
|
- Consensus
-
NHGTCTVNNN
NNNBAGACDN
|
-
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3805)
-
|
- PWM
-
View
|
- Consensus
-
NNCMAANNNN
NNNNTTKGNN
|
- Downloads
-
Download the
zip
of all Smad3 PBM files
or view the
downloads directory
for individual files.
|
- Link to TFBSshape
-
This link will take you to the corresponding entry for Smad3
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=0&sourceDB=uniprobe
|
| -Smad3 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH3805 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
|
|
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH3805 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
|
|
- Clone pTH3805 insert sequence
- 1 IVKRLLGWKK GEQNGQEEKW CEKAVKSLVK KLKKTGQLDE LEKAITTQNV
51 NTKCITIPRS LDGRLQVSHR KGLPHVIYCR LWRWPDLHSH HELRAMELCE
101 FAFNMKKDEV CVNPYHYQRV ETPVLPPVLV PRHTEIPAE
- DNA Binding Domains (Pfam) for clone 3805
-
Region 18..121
1 EKWCEKAVKS LVKKLKKTGQ LDELEKAITT QNVNTKCITI PRSLDGRLQV
51 SHRKGLPHVI YCRLWRWPDL HSHHELRAME LCEFAFNMKK DEVCVNPYHY
101 QRVE
-
|
- References
-
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
|
|