-Genomic Data Links
Protein
Bbx
UniPROBE Accession Number
UP00012
Species
Mus musculus
Domain
HMG_box
Uniprot
Q8VBW5
Name and Synonyms
bobby sox homolog (Drosophila)
Bobby sox homolog, Hbp2, HMG box-containing protein 2, HMG box transcription factor BBX
IHOP
135679
RefSeq
NP_081720
Description
None Available
JASPAR
N/A
-PBM Motif Data for Bbx
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
TTCA.TGAA E.S. 0.467
TTCA.TGAA E.S. 0.467
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
A..GTTAACA E.S. 0.420
TGTTAAC..T E.S. 0.420
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3753)
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PWM
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Consensus
NNNNNNNNNN
NNNNNNNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3753)
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PWM
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Consensus
NNNHVHNNNN
NNNNDBDNNN
Downloads
Download the zip of all Bbx PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Bbx in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=12&sourceDB=uniprobe

-Bbx Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3753 #1 AMADID #016060 E. coli DNA binding domain only 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3753 #1 AMADID #015681 E. coli DNA binding domain only 2014-08-13 save search
Clone pTH3753 insert sequence
1    EQDVAETEDD ESPEQRARRP MNAFLLFCKR HRSLVRQEHP RLDNRGATKI
51   LADWWAVLDP KEKQKYTDMA KEYKDAFMKA NPGYRWCPTT NKPVKSPTPT
101  V

DNA Binding Domains (Pfam) for clone 3753
Region 17..85
1   ARRPMNAFLL FCKRHRSLVR QEHPRLDNRG ATKILADWWA VLDPKEKQKY
51  TDMAKEYKDA FMKANPGYR
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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