Protein Details

-Genomic Data				Links
Protein Sox17	UniPROBE Accession Number UP00014	Species Mus musculus	Domain HMG_box	Uniprot Q61473
Name and Synonyms SRY-box containing gene 17 Sox-17, Transcription factor SOX-17				IHOP 124777
				RefSeq NP_035571
Description None Available				JASPAR MA0078

-PBM Motif Data for Sox17
Primary Motif (Seed-And-Wobble)				Primary PWM View Save
Primary Motif (Seed-And-Wobble)				Top Kmer AACAATT.A E.S. 0.480 T.AATTGTT E.S. 0.480
Secondary Motif (Seed-And-Wobble)				Secondary PWM View Save
Secondary Motif (Seed-And-Wobble)				Top Kmer CATTCAT..A E.S. 0.434 T..ATGAATG E.S. 0.434
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH2837)				PWM View
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH2837)				Consensus NNNNNWSAAT ATTSWNNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2837)				PWM View
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2837)				Consensus NDTWVDNNNN NNNNHBWAHN
Downloads Download the zip of all Sox17 PBM files or view the downloads directory for individual files.
Link to TFBSshape This link will take you to the corresponding entry for Sox17 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites. http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=14&sourceDB=uniprobe

-Sox17 Datasets
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH2837	#1	AMADID #016060	IVT	DNA binding domain only	2014-08-13
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH2837	#1	AMADID #015681	IVT	DNA binding domain only	2014-08-13
Clone pTH2837 insert sequence `1 SGAPAGTSGR AKAESRIRRP MNAFMVWAKD ERKRLAQQNP DLHNAELSKM 51 LGKSWKALTL AEKRPFVEEA ERLRVQHMQD HPNYKYRPRR RKQVKRMKRV 101 E` DNA Binding Domains (Pfam) for clone 2837 Region 17..85 `1 IRRPMNAFMV WAKDERKRLA QQNPDLHNAE LSKMLGKSWK ALTLAEKRPF 51 VEEAERLRVQ HMQDHPNYK`
References `Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009`